PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0537

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 1619aa MW: 179724 Da PI: 6.8731

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0537	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.4e-07	1248	1291	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C++ ++ lCe+C +H g H++++ Gh_D08G0537 1248 LLCERCNSQPALVRCTEERVSLCENCDWIGH-GtstsnstHKRQT 1291 57*****************************.5578888888766 PP
2	CCT	60.4	6.2e-21	1562	1605	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ Gh_D08G0537 1562 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 1605 899**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.3E-10	1202	1249	IPR000315	B-box-type zinc finger
CDD	cd00021	6.26E-8	1207	1249	No hit	No description
PROSITE profile	PS50119	9.3	1207	1249	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.916	1245	1292	IPR000315	B-box-type zinc finger
CDD	cd00021	6.34E-5	1249	1292	No hit	No description
SMART	SM00336	1.5	1250	1292	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.6E-15	1562	1604	IPR010402	CCT domain
PROSITE profile	PS51017	15.448	1562	1604	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1619 aa Download sequence Send to blast
MFGKGISFAQ DKKIESTGDS ATTLTDQTMC DCSSNPKDGS VAENFVDHQI QTPNQLNKEE 60 MHRSPLAGSI HSLSAKRQQL LLDTTNSPRH ALFVTPSPKQ SGSFLSQGSI KQGGIVPSVL 120 KSNIKLKILE CTPLASAFND GILKSKIRLS DSLSSRASAC SFSKIMEPSE DFQCQQVTAP 180 AINLKEQLSG VGLKQGEIDG PVTPKNISYL SQDGGTTELL EDKEHYEKYA ERMGKTTAFN 240 SLPMGITLEI GKDKRDLDTA YKLVSPLMNR LKEKLCSSTE HHSSLSGNLK PHDQDNSIII 300 VSREDPNSLE TVPSSNYLTA TAENRTQSSL PLIKANHLTG TSIVKKLNEG ESNGLDMLNA 360 SENSRNLPEG FTLKLQSRSP EKNIETAIEI TQFSGSFIQE QIKVSSSYAS PDAPRSKNDQ 420 LPLKSGAMIA QSPFRKKQTQ SPTSKEPSCR PYRKEMHRGL CGDNMQLPVA KDDPSPDQDT 480 QNSSKRKRIS EVVLADMHPA DKNKCIQQSP NFREIGEKNM EHMLEYSNGS NIGNKGIEGG 540 KTLMNMTDIS SKLSADTKQL LSPSFDKLNI KVINMLEDIL LHQQKVNKLE MLCSEIQSKL 600 GSANGQSCNI QYKSVAETRL LLYRLIYEKA KLQLMQVKRE RLLNQVQLLR TGVRESQMLK 660 LNYVKHPSVS AGRDTQLDNN TCSVRSGENL EGTNDKVRTM KHEADALEKK INNLTKSLCP 720 HFKIKGELSC ADTIDLLNDH LKKRTCWGYI RQDMQLWEVD VLQNRNGYHN VILNYHEFLS 780 QSLTLDTSPN SSIFVGNKLN DVNISKNFPN MDACSAFAFV FNHEYTKKYV GPKCLAQETQ 840 RTSSLLRNLL DVIEEVQIAR LEIRGLILTS FRSPSAKQLD LQLAFIDFES GVKLIMSLDL 900 TCLNCGVYPS EILPHHLQTS TTRTDDLHCP LSIEIKAAIS NLRAGYSRII RLCRCVFRNS 960 NPYHNTRKND TVVLQYQLES ILLSALICGV NIIWVSKENS FGLCSNKINL CPKLSHVDIF 1020 NLIVATFNGL SDTDGPSFRR IVVILETLAK YRSCVVMLDL ECDDLVNEMF STFFSVVRRL 1080 AMNVIEQCSE KLEAGIKQIL ISVMSGDNQL IKSEIDYHEV IHGIYHCAPQ ILSEFLKRLT 1140 NRVVDVRMSV LEHVKICLLL DPSRPEAPQI ICIEVHEEIA ESGIMEKLLA MALLWWSAVI 1200 ANMGYNCDFC GHQRPVVYCR SDAACLCLSC DRNVHSANAL SRRHSRTLLC ERCNSQPALV 1260 RCTEERVSLC ENCDWIGHGT STSNSTHKRQ TINCYSGCPS SAELSSLWPF FWQSPSPGES 1320 TCEKELGLMS ITENIETTSW GPTGNTVSQN KNSAGVAEVN NDNNADMGSG WDGSSSILEL 1380 RSPPQALDQP AGVTDTSLPK VSCPQTKRPS LCEDDLYDDF NMDEVDLNLD NYEELFGVAL 1440 NHSEELFESG GIDSLFRTND LSAADSDCRG AVAAEGSSVG LVNAIQPACS NGASADSVMS 1500 NKTDSVLCFT GRQAHSSLSF SGLTGESSGA DYQDCGASSM LLMGEPPWCP PCTESSFQSS 1560 TRSNAVMRYK EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLNQTQSF

Sequence ? help Back to Top

Protein Sequence Length: 1619 aa Download sequence Send to blast

MFGKGISFAQ DKKIESTGDS ATTLTDQTMC DCSSNPKDGS VAENFVDHQI QTPNQLNKEE  60
MHRSPLAGSI HSLSAKRQQL LLDTTNSPRH ALFVTPSPKQ SGSFLSQGSI KQGGIVPSVL  120
KSNIKLKILE CTPLASAFND GILKSKIRLS DSLSSRASAC SFSKIMEPSE DFQCQQVTAP  180
AINLKEQLSG VGLKQGEIDG PVTPKNISYL SQDGGTTELL EDKEHYEKYA ERMGKTTAFN  240
SLPMGITLEI GKDKRDLDTA YKLVSPLMNR LKEKLCSSTE HHSSLSGNLK PHDQDNSIII  300
VSREDPNSLE TVPSSNYLTA TAENRTQSSL PLIKANHLTG TSIVKKLNEG ESNGLDMLNA  360
SENSRNLPEG FTLKLQSRSP EKNIETAIEI TQFSGSFIQE QIKVSSSYAS PDAPRSKNDQ  420
LPLKSGAMIA QSPFRKKQTQ SPTSKEPSCR PYRKEMHRGL CGDNMQLPVA KDDPSPDQDT  480
QNSSKRKRIS EVVLADMHPA DKNKCIQQSP NFREIGEKNM EHMLEYSNGS NIGNKGIEGG  540
KTLMNMTDIS SKLSADTKQL LSPSFDKLNI KVINMLEDIL LHQQKVNKLE MLCSEIQSKL  600
GSANGQSCNI QYKSVAETRL LLYRLIYEKA KLQLMQVKRE RLLNQVQLLR TGVRESQMLK  660
LNYVKHPSVS AGRDTQLDNN TCSVRSGENL EGTNDKVRTM KHEADALEKK INNLTKSLCP  720
HFKIKGELSC ADTIDLLNDH LKKRTCWGYI RQDMQLWEVD VLQNRNGYHN VILNYHEFLS  780
QSLTLDTSPN SSIFVGNKLN DVNISKNFPN MDACSAFAFV FNHEYTKKYV GPKCLAQETQ  840
RTSSLLRNLL DVIEEVQIAR LEIRGLILTS FRSPSAKQLD LQLAFIDFES GVKLIMSLDL  900
TCLNCGVYPS EILPHHLQTS TTRTDDLHCP LSIEIKAAIS NLRAGYSRII RLCRCVFRNS  960
NPYHNTRKND TVVLQYQLES ILLSALICGV NIIWVSKENS FGLCSNKINL CPKLSHVDIF  1020
NLIVATFNGL SDTDGPSFRR IVVILETLAK YRSCVVMLDL ECDDLVNEMF STFFSVVRRL  1080
AMNVIEQCSE KLEAGIKQIL ISVMSGDNQL IKSEIDYHEV IHGIYHCAPQ ILSEFLKRLT  1140
NRVVDVRMSV LEHVKICLLL DPSRPEAPQI ICIEVHEEIA ESGIMEKLLA MALLWWSAVI  1200
ANMGYNCDFC GHQRPVVYCR SDAACLCLSC DRNVHSANAL SRRHSRTLLC ERCNSQPALV  1260
RCTEERVSLC ENCDWIGHGT STSNSTHKRQ TINCYSGCPS SAELSSLWPF FWQSPSPGES  1320
TCEKELGLMS ITENIETTSW GPTGNTVSQN KNSAGVAEVN NDNNADMGSG WDGSSSILEL  1380
RSPPQALDQP AGVTDTSLPK VSCPQTKRPS LCEDDLYDDF NMDEVDLNLD NYEELFGVAL  1440
NHSEELFESG GIDSLFRTND LSAADSDCRG AVAAEGSSVG LVNAIQPACS NGASADSVMS  1500
NKTDSVLCFT GRQAHSSLSF SGLTGESSGA DYQDCGASSM LLMGEPPWCP PCTESSFQSS  1560
TRSNAVMRYK EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLNQTQSF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24855	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022758880.1	0.0	uncharacterized protein LOC111305523 isoform X2
TrEMBL	A0A2P5SSM2	0.0	A0A2P5SSM2_GOSBA; Uncharacterized protein
STRING	Gorai.004G060900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	1e-115	CONSTANS-like 9