PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0898

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 114aa MW: 12337.7 Da PI: 6.9276

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0898	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.4	4.3e-10	1	21	36	56
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m+v++Lt+++vkSHLQkYRl+ Gh_D08G0898 1 MQVDSLTNDEVKSHLQKYRLH 21 99*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-9	1	24	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MQVDSLTNDE VKSHLQKYRL HTRRLPATTI TTTPANQLGL VLGGGHAWMC QDQFGESSKG 60 SSSQSGSPQG PLQLATNTGG TSTTACESIE DDEDAKFVCY SWKSHVQKPI KNNV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.688	1e-173	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964612	2e-51	JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463947.1	1e-65	PREDICTED: uncharacterized protein LOC105783193
Swissprot	Q9FX84	2e-14	HHO6_ARATH; Transcription factor HHO6
TrEMBL	A0A2P5SC94	2e-78	A0A2P5SC94_GOSBA; Uncharacterized protein
STRING	Gorai.001G158700.1	2e-56	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20696	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-08	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]