PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1057
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 83aa    MW: 9768.13 Da    PI: 9.8346
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1057genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-1031632755
                 HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
     Homeobox 27 aeereeLAkkl....gLterqVkvWFqNrRake 55
                 +   +++++++    +++ ++V++WFqNr+a+e
  Gh_D08G1057 31 TPNVQQITAQVwkydNIEGKNVFYWFQNRKARE 63
                 455788888888999****************97 PP
2Wus_type_Homeobox551.9e-1826662164
  Wus_type_Homeobox 21 ksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++G+rtPn   +q+ita+  +y +ie+kNVfyWFQNrkaRe qk
        Gh_D08G1057 26 YRGMRTPN---VQQITAQVWKYDNIEGKNVFYWFQNRKARETQK 66
                       48*****8...6889**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.4E-73163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-43270IPR009057Homeodomain-like
SuperFamilySSF466892.45E-53370IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MTNSSNILIC KEEVGGGVQH EQIIKYRGMR TPNVQQITAQ VWKYDNIEGK NVFYWFQNRK  60
ARETQKYKHN TTFVPETQLP LPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023536907.13e-15WUSCHEL-related homeobox 4-like
SwissprotQ6X7J95e-13WOX4_ARATH; WUSCHEL-related homeobox 4
STRINGXP_008444600.19e-14(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-15WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]