PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1112
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26897.1 Da    PI: 6.6863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1112genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-203084256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +k+++f++eq++ Le+ Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Gh_D08G1112 30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 84
                 67779*************************************************9 PP
2HD-ZIP_I/II127.65.5e-4130122193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kkrr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L  ++++
  Gh_D08G1112  30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKHSLILQIQK 122
                  59*************************************************************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.63E-202087IPR009057Homeodomain-like
PROSITE profilePS5007118.6572686IPR001356Homeobox domain
SMARTSM003893.7E-192990IPR001356Homeobox domain
PfamPF000461.4E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-203193IPR009057Homeodomain-like
CDDcd000862.56E-153387No hitNo description
PRINTSPR000314.3E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000314.3E-66682IPR000047Helix-turn-helix motif
PfamPF021831.7E-1586127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEREYNPAAD EAIAEQAPQT PKNKKKNKMK KKRRFSDEQI RLLESIFESE TKLEPRKKMQ  60
LARELGLQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKHSLILQI  120
QKLSELLEEP HKGGKGLDGS STGGGGGSDY GETKCETEVE AQPSFQHKEC LGLQTENERG  180
DIKQTGQGGE EFLIMDEYRN DSPASPDKFY GLHSVDMFDH SYTNCQWLNF WT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKKRR
27886RRARWKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695114.11e-174PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U8K3C91e-172A0A1U8K3C9_GOSHI; homeobox-leucine zipper protein ATHB-12-like
STRINGGorai.004G123500.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1899938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-45homeobox 7