PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1340
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 268aa    MW: 30424.7 Da    PI: 5.1979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1340genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+ +G g+W+++ar  g++Rt+k+c++rw++yl
      Gh_D08G1340 24 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding506.7e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + +E++l+++++ q+G++ W++Ia++++ gRt++++k++w++
      Gh_D08G1340  77 RGNISLQEQLLILQLHSQWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                      788899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-211774IPR009057Homeodomain-like
PROSITE profilePS5129424.8531975IPR017930Myb domain
SuperFamilySSF466893.56E-3121118IPR009057Homeodomain-like
SMARTSM007171.6E-152373IPR001005SANT/Myb domain
PfamPF002498.7E-172471IPR001005SANT/Myb domain
CDDcd001671.09E-112671No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2275125IPR009057Homeodomain-like
SMARTSM007173.4E-1476124IPR001005SANT/Myb domain
PROSITE profilePS5129418.81376126IPR017930Myb domain
PfamPF002492.4E-1477120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVYESGFIS EMTPQSKEDM DVRKGPWTEE EDYMLKTYVN VHGEGSWNSV ARLSGLKRTG  60
KSCRLRWLNY LRPEVRRGNI SLQEQLLILQ LHSQWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQAKQLK CDVNSKQFRD AMRYVWIPRL VEQICSSSGS HSAQQSSSTT TTYADTIGSV  180
RVDPRLLPEL SGTSSDSLDA QVSSVSDLTN SKYPNSLQNG SGSGNTIAGT WGGVEIEATD  240
GGDSMESVWN EEDIWFLRQQ LYDDDDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24211264108B-MYB
1h8a_C6e-242112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.156570.0boll| ovule| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694083.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB42e-78MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2P5YTA30.0A0A2P5YTA3_GOSBA; Uncharacterized protein
STRINGGorai.004G145800.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.12e-73myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]