PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1374
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 476aa    MW: 53054.7 Da    PI: 6.7575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1374genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12296341454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gh_D08G1374 296 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 341
                  699***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-5126194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-13295346No hitNo description
SuperFamilySSF474594.06E-17295357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSHE TPPSTLQQRL QHVLESQKDW WAYAIFWQTT NDDLGRLLLA  60
WGDGHFQGTN KSPKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA  120
GDGIPGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSSEII  180
RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGIIAGVQEQ EHASLGFKTK  240
KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA  300
ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDHKKVK  360
IETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA  420
ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTDNGFG LHEQGLKSAI LTRLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-35251948192Transcription factor MYC3
4rqw_B9e-35251948192Transcription factor MYC3
4rs9_A9e-35251948192Transcription factor MYC3
4yz6_A9e-35251948192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.124960.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098693160.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693667.10.0PREDICTED: transcription factor MYC2-like isoform X2
RefseqXP_016693676.10.0PREDICTED: transcription factor MYC2-like isoform X3
TrEMBLA0A1U8JTR60.0A0A1U8JTR6_GOSHI; transcription factor MYC2-like isoform X2
STRINGGorai.004G149500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-87bHLH family protein