PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1663

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 279aa MW: 31645.4 Da PI: 9.8199

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1663	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Gh_D08G1663 25 KPRLRWTADLHDRFVDAVTKLGGPNKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.847	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-31	22	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	25	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-9	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-22	124	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MERLSYGGNG NYGYENGVVM TRDPKPRLRW TADLHDRFVD AVTKLGGPNK ATPKSVLRLM 60 GLKGLTLYHL KSHLQKYRLG QQSRKQNAAD QNKENGRNSY VQFSNHSSGT VTNSPRADDD 120 KRQIQMTEVL KSQMEVQKTL QEQLEVQKKL QMRIEAQGKY LQAILEKAQK SLSFDIHSEE 180 NVEEKRAQLT NFNLPLSSLM DSTNEADRKS NMAQMNDVIP TKANFSASFH GHGVGDREEN 240 KHVKRKVEGD SINFDLNTKD SNEYGAVNGN QLQSHFVFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	25	78	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	25	78	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	25	78	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	25	78	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578082	4e-76	JX578082.1 Gossypium hirsutum clone NBRI_GE10029 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681817.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	1e-82	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1U8IUM7	0.0	A0A1U8IUM7_GOSHI; myb family transcription factor APL-like isoform X1
TrEMBL	A0A2P5S472	0.0	A0A2P5S472_GOSBA; Uncharacterized protein
STRING	Gorai.004G180000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-69	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]