PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1680
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 406aa    MW: 43034.1 Da    PI: 6.5811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1680genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.94e-22306368163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN  L++e+++lk e+++l +e+
  Gh_D08G1680 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENANLRSEVSRLKSEYEQLHAEN 368
                  89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-50136273No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-18299365No hitNo description
SMARTSM003383.9E-21306370IPR004827Basic-leucine zipper domain
PfamPF001703.0E-20306368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.714308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-11309365No hitNo description
CDDcd147021.70E-24311361No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGSSEMDKAA KEKEPKTPPA ITAQESSSTT NSGSVNADWS GFQAYSPIPP HGFLASSPQA  60
PPYMWGVQHI MPPYGTPPHP YVAMYPHGGI YAHPSLPPGS YPFSPFAMPS PNGIAEASGN  120
TPGSMEMDGK PPEVKEKLPI KRSKGSLGSL NMITGKNNNL GKTSGASANG GYSKSADSGS  180
EGTSEGSDAN SQNDSQLQSG DGKDSGEGEA SQNGRSAHGP QNGGPNSAHS VANTALAIVP  240
ISTTSAATAV PGPTTNLHIG MDYWGTPASS NVPAMHAKVP STPVAGGIVT PGSRDNVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA EALKEENANL RSEVSRLKSE  360
YEQLHAENAS LKERLGEIPG HEDLKSGRND QHRNEDEQTE IVQGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.22000.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717826.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_016717827.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_016717828.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_016717829.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-170BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8LTB60.0A0A1U8LTB6_GOSHI; bZIP transcription factor 16-like
STRINGGorai.004G181900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-158basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]