PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1686

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 373aa MW: 41819.7 Da PI: 8.8911

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1686	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	193	246	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gh_D08G1686 193 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 246 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	190	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	191	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	193	246	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	194	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PTSRGLDSRS SMSSMAKPDN CFELSFSNPR VSDSNSNHFH 60 QLLQNGSATA NCNGNLFQSY HHNQFPHHHN QLQHPLLYQH QHHHQQHQQG LGQEFGFLRP 120 IRGIPVYQNP PPPPPSPPFP FAQQPLDSSL PSSPSYLATT KIGNTSLNPF QSQGLMRSRF 180 MSRFPAKRSM RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH 240 LQMYRTVKTT DRAAASSAGQ MDAFENGSSG DTSEDMMFEI QNPRRSEISV QQGRSSSSNA 300 HQDKEYHGLW SNSSREAWLH GKPNDSPLNL PSLQKDMDPK CLSYERISDV SSSSLSETCS 360 KKPNLEFTLG VPH

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PTSRGLDSRS SMSSMAKPDN CFELSFSNPR VSDSNSNHFH  60
QLLQNGSATA NCNGNLFQSY HHNQFPHHHN QLQHPLLYQH QHHHQQHQQG LGQEFGFLRP  120
IRGIPVYQNP PPPPPSPPFP FAQQPLDSSL PSSPSYLATT KIGNTSLNPF QSQGLMRSRF  180
MSRFPAKRSM RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH  240
LQMYRTVKTT DRAAASSAGQ MDAFENGSSG DTSEDMMFEI QNPRRSEISV QQGRSSSSNA  300
HQDKEYHGLW SNSSREAWLH GKPNDSPLNL PSLQKDMDPK CLSYERISDV SSSSLSETCS  360
KKPNLEFTLG VPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	194	248	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21731	1e-116	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623780.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	5e-81	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0B0MP71	0.0	A0A0B0MP71_GOSAR; Putative transcription factor KAN2-like protein
STRING	Gorai.004G182500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-73	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]