PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1717
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 148aa    MW: 15166.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1717genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.27.1e-152953125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL+YP+GA+sV+Ca+C+++
  Gh_D08G1717 29 CSGCRNLLMYPAGATSVCCAVCNAI 53
                 ***********************97 PP
2zf-LSD146.85e-156892125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Gh_D08G1717 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                 ************************9 PP
3zf-LSD141.81.7e-13106130125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gh_D08G1717 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-142656IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.0E-429127IPR011031Multihaem cytochrome
PfamPF069434.0E-122953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.1E-12103131IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12106130IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPVPLAPYPT PSGSYTPPAN AGAQSQLVCS GCRNLLMYPA GATSVCCAVC NAITAVPPPG  60
TEMAQIVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSAGGSASGA AEQKLNNT
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703831.11e-98PREDICTED: protein LOL1-like
RefseqXP_016703833.11e-98PREDICTED: protein LOL1-like
RefseqXP_016703834.11e-98PREDICTED: protein LOL1-like
RefseqXP_016703835.11e-98PREDICTED: protein LOL1-like
RefseqXP_017625404.11e-98PREDICTED: protein LOL1-like
RefseqXP_017625405.11e-98PREDICTED: protein LOL1-like
RefseqXP_017625406.11e-98PREDICTED: protein LOL1-like
SwissprotQ93ZB14e-78LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PTX42e-97A0A0B0PTX4_GOSAR; Protein LOL1-like protein
TrEMBLA0A1U8KS662e-97A0A1U8KS66_GOSHI; protein LOL1-like
STRINGGorai.004G186300.19e-92(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-74lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]