PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1734
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 554aa    MW: 62106 Da    PI: 6.7914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1734genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.71.6e-25318372256
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 
                   +++Wt+eLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQ kYR++
  Gh_D08G1734 318 LKVDWTTELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 372
                  5899****************.****************************549**86 PP
2Response_reg22.45.9e-09201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ d++ + +  +++ le  +y +v ++ +  eal  +  +   +++ ++ +       G+++l++ +    +lp i+ +     +++ +++ +Ga
   Gh_D08G1734  20 VLLLDEDTNSAAEIKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEVCTNSnNGGFKFLETAK----DLPTIMTSNIHCISTMMKCIALGA 111
                   79999999999************.***************666666*******88777477888887654....578888887777************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +fl Kp ++++l++
   Gh_D08G1734 112 VEFLRKPLSEDKLRN 126
                   ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.4E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-1516138No hitNo description
PROSITE profilePS5011019.5419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.51E-721131No hitNo description
PROSITE profilePS5129412.635314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-24315374IPR009057Homeodomain-like
SuperFamilySSF466893.4E-15316374IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-23317373IPR006447Myb domain, plants
PfamPF002497.5E-6320367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVCTRNDLSA WKDFPKGLRV LLLDEDTNSA AEIKSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE VCTNSNNGGF KFLETAKDLP TIMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFSAGG DDLSESLKPV KDYVASMLHQ QLENGECKHE DLDKIEDASM  180
IHEKDHEPSA VNNKYPAPST PQLQQGGRLI VNGDCQEHTN CSMEKESGEP DGESKSVETT  240
SGHTIAEVIA PVGQHQKPRE TMVKEEADSV DGAKGERTLD SHPRDRVNSE DSHAGAEKPN  300
TVSGLHSSRP NKANRKKLKV DWTTELHKKF VQAVDQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQQKYR MHKRHILPKE DDRRWPQRDQ TQRSCHPHKP IMAFPPYHSN PVPVGPVYPM  420
WGTPHPASIQ TWGSQGYYHP WQPTESWQWK PYPGVHADAW GCPVMPIPQG NCSTFTRNGY  480
GFHCSSTMDN RSGMPQNSIQ HQPAEEVIEE VVKEAINKPW LPLPLGLKPP STDSVLAELS  540
RQGISTIPPR NQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14315371358ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.111120.0boll| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475747.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_012475748.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_012475749.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_012475750.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-141APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0D2R7E10.0A0A0D2R7E1_GOSRA; Uncharacterized protein
STRINGGorai.004G188300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-137ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]