PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1769

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 227aa MW: 25914 Da PI: 9.715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1769	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.1	2.7e-19	19	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+k+e+l+Liea++e++ lr ++lk+ +W +vs+++ + +s++qC++k+e+l++r++++k+++ k++ + ss++ +f l+ Gh_D08G1769 19 CWSKEETLVLIEAYKEKWFVLRCQNLKASDWGAVSSAVsfaSGPETMKSSVQCRHKIEQLRQRFRAEKQRSLKNRGKFSSSWDLFPLLD 107 8***********************************9866666789*********************99********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-19	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MATPQSYSAT ATQRVAPPCW SKEETLVLIE AYKEKWFVLR CQNLKASDWG AVSSAVSFAS 60 GPETMKSSVQ CRHKIEQLRQ RFRAEKQRSL KNRGKFSSSW DLFPLLDSMN FVPVSVNGSA 120 DQENLYYNKD GGFCWKLKNH EKIYGNLGPE LGVKNGNGGV KRGMDPVEEM VSSIKLLAEG 180 FVRMEKMKIE MVKDVEKTRM KMEMKHNEMI LESRQKIMDV FAKALLE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21161	5e-54	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667380.1	1e-106	PREDICTED: uncharacterized protein LOC107887646
TrEMBL	A0A2P5RHR2	1e-107	A0A2P5RHR2_GOSBA; Uncharacterized protein
STRING	EOY24171	9e-61	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-21	Trihelix family protein