PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1858
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 357aa    MW: 41596.4 Da    PI: 6.9016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1858genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.2e-5471351129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kkv++k  +l +vik+vd+y++ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nratk g+Wkatg+dk+++s 
  Gh_D08G1858   7 VPPGFRFHPTDEELVDYYLRKKVASKI-DL-DVIKDVDLYNIEPWDLQElcRIGTeDQNEWYFFSHKDKKYPTGTRTNRATKLGFWKATGRDKPIYS- 101
                  69*********************9876.77.89**************954555552555**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Gh_D08G1858 102 RQSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 135
                  999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-585155IPR003441NAC domain
PROSITE profilePS5100559.8917155IPR003441NAC domain
PfamPF023651.6E-288134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKIDLDVIKD VDLYNIEPWD LQELCRIGTE  60
DQNEWYFFSH KDKKYPTGTR TNRATKLGFW KATGRDKPIY SRQSLIGMRK TLVFYKGRAP  120
NGQKSDWIMH EYRLETNENG TPQEEGWVIC RVFKKRMTTV RKMGEYESSR WYDGQVSFMQ  180
ELDSPRRIPQ PYASYYHRYP CKPVLKLQYN SPHDPTFQLP QLENPNVQQY SAASLSCNSV  240
LPDGNYDGKT GSTLQSSTLT QEEHMHPMHQ QNLKSFYDST TEQAVDQVTD WRVLDKFVAS  300
QLSHEEASKE SNYCNADTSF YVAAQMNLAS NESKRPEIAH QEYASTSTSS CQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49615614169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472110.0KC847211.1 Gossypium hirsutum NAC domain protein NAC34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718615.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-148NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U8LVL20.0A0A1U8LVL2_GOSHI; NAC domain-containing protein 7-like
STRINGGorai.004G201100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-147NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]