PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1891
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 247aa    MW: 26713.1 Da    PI: 8.7957
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1891genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.38.5e-26136180145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs+k +e+
  Gh_D08G1891 136 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSTKLVEA 180
                  79****************************************997 PP
2QLQ46.89.1e-1767101337
          QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT  Qlq+L  Q l+yKy+ a++PvP++Ll++i+k
  Gh_D08G1891  67 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 101
                  8888*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.1E-665101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.35566101IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-1167100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.509136180IPR014977WRC domain
PfamPF088797.4E-22137179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEPQDSSPLK TAHFSDLGIG FTNLGDSWNK ESNRLSGGEG SPPIGLGLEL GCGSGHIPTG  60
ITKSCGFTVF QLQELQLQSL IYKYMEAGLP VPHHLLLPIW KSVAGSLGGL HGSPYQLYYG  120
FLGCGPLQLG YKNGVDPEPG RCRRTDGKKW RCSKEAVPDH KYCERHMHRG RQRSTKLVEA  180
SQATRTSISR NNANTNLSIS LQVDSSNNSG NGSNLSSSFT GFSPNIALLR GGDSKAVPHS  240
LQFQELL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476011.10.0PREDICTED: growth-regulating factor 10-like
TrEMBLA0A2P5RZ311e-180A0A2P5RZ31_GOSBA; Uncharacterized protein
STRINGGorai.004G204600.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-35growth-regulating factor 5