PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1922

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 231aa MW: 24809.9 Da PI: 6.2424

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1922	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3e-17	70	118	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Gh_D08G1922 70 LYRGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 118 69*854..6*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.1E-11	69	118	IPR001471	AP2/ERF domain
CDD	cd00018	2.19E-17	69	128	No hit	No description
PROSITE profile	PS51032	20.455	70	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.55E-18	70	128	IPR016177	DNA-binding domain
SMART	SM00380	5.5E-28	70	132	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.0E-27	70	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MADPNNPTNV PQLNQSSQRP VLLSLDQHSL ITTNSHTCQN PSPACHGLPP PTPRKANMAS 60 ASSPSGKHPL YRGIRRRSGK WVSEIREPRK TTRIWLGTYP TPEMAAAAYD VAALALKGAE 120 AFVNFPASVA SYPLPASISS ADIRKAAAAA ALLKKAESNG IEIDLGSGHP HPAKKEEMTS 180 TEEYMDEDVF LNLPNLLVDM AEGLLVSPPR LSSTPSDDSP ENSDGESLWS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-13	66	131	3	68	ATERF1
3gcc_A	1e-13	66	131	3	68	ATERF1
5wx9_A	1e-13	67	126	11	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477988.1	1e-168	PREDICTED: ethylene-responsive transcription factor ERF027-like
Refseq	XP_016717049.1	1e-168	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	1e-54	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A0D2N1E8	1e-167	A0A0D2N1E8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LUZ1	1e-167	A0A1U8LUZ1_GOSHI; ethylene-responsive transcription factor ERF027-like
STRING	Gorai.004G208000.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	6e-49	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]