PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1932
Common NameHSF9
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 311aa    MW: 34382.2 Da    PI: 4.7586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1932genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
   Gh_D08G1932  28 FLTKTYQLVDDPSVNDMISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRDIQ 115
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_D08G1932 116 RRKM 119
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-3825117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.59E-3525117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.9E-4171196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASLPADQPS ESTASGAADS QRSLPTPFLT KTYQLVDDPS VNDMISWNED GSTFIVWRPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKGL LRDIQRRKMT  120
PTTTAPAATV TVAAIPCKVS PSNSGDEQVI SSNSPPVATV LHRTTSSTTP ELLEENERLR  180
KENMQLNHEL TQLKGLCNNI LTLMTNYASG QSENNSNSAE GKALDLLPGK NSGTKAGGVG  240
PKEAVDMEED VTPKLFGVSI GMKRVRREDS VEEQNNNQEQ QQEIECEPGV KAEPLDGKSD  300
DQDSSWLELG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-262811729129Heat shock factor protein 1
5d5v_B5e-262811729129Heat shock factor protein 1
5d5v_D5e-262811729129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30480.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024510.0KJ702451.1 Gossypium hirsutum heat shock transcription factor (HSF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314237.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-104HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2P5VTI60.0A0A2P5VTI6_GOSBA; Uncharacterized protein
STRINGGorai.004G208800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]