PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2028
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 305aa    MW: 32118.2 Da    PI: 6.0521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2028genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09154198554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Gh_D08G2028 154 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 198
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MANNPNEASA DDFLEQILGF PNFAPSETGL AGPDGGLTGT TAGAGTPMFL QLSSGDGASH  60
LGGIGGGGGG AFPGQVFPLG LSLDQGKSGG FLKPEEGSGG SSRRFRDEVV DGRASSVKNV  120
FHGSPMPATV APSPHPPTMR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN  180
KTDRAVMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVED ESGDGGRNQP  240
AWEKWSNDGT ERQVAKLMEE NVGAAMQFLK SKALCIMPIS LATAIYHSQP LDTSSIVKPE  300
TDPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476242.10.0PREDICTED: transcription factor UNE12-like
RefseqXP_012476243.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-133UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2PGB40.0A0A0D2PGB4_GOSRA; Uncharacterized protein
STRINGGorai.004G218900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]