PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2049

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 268aa MW: 30963.7 Da PI: 6.178

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2049	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.8	5.3e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kkv+++++ ++ ++d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ ++ Gh_D08G2049 10 LPPGFRFYPSDEELVCHYLFKKVANEEILK-GTLVDIDLHTCEPWQLPEVAKLNASEWYFFSFRDRKYATGFRTNRATASGYWKATGKDRTVIDPrTQ 106 79***********************877.78***********87788899*********************************98677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 e+vg++ktLvf+k+rap+g kt W+mhe+rle Gh_D08G2049 107 EVVGMRKTLVFHKNRAPNGIKTGWIMHEFRLE 138 78*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	8	157	IPR003441	NAC domain
PROSITE profile	PS51005	57.37	10	156	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KVANEEILKG TLVDIDLHTC EPWQLPEVAK 60 LNASEWYFFS FRDRKYATGF RTNRATASGY WKATGKDRTV IDPRTQEVVG MRKTLVFHKN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKNKGD NINNNPTTML ETSSSRAFSL 180 RDQTSLHYGH QLQQMATSLS FPQPHPSHGQ SLLSLLQQNS NNNPYTNEVI SSKVEDEFDF 240 FWDINTVENS LEDIKFDNNE DDDNVGFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-47	9	157	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-47	9	157	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-47	9	157	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-47	9	157	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	6e-47	9	157	19	169	NAC domain-containing protein 19
3swm_B	6e-47	9	157	19	169	NAC domain-containing protein 19
3swm_C	6e-47	9	157	19	169	NAC domain-containing protein 19
3swm_D	6e-47	9	157	19	169	NAC domain-containing protein 19
3swp_A	6e-47	9	157	19	169	NAC domain-containing protein 19
3swp_B	6e-47	9	157	19	169	NAC domain-containing protein 19
3swp_C	6e-47	9	157	19	169	NAC domain-containing protein 19
3swp_D	6e-47	9	157	19	169	NAC domain-containing protein 19
3ulx_A	7e-47	1	157	1	169	Stress-induced transcription factor NAC1
4dul_A	5e-47	9	157	16	166	NAC domain-containing protein 19
4dul_B	5e-47	9	157	16	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11166	0.0	stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109842420	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269\|PubMed:11114891}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847213	0.0	KC847213.1 Gossypium hirsutum NAC domain protein NAC36 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476276.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-64	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2P5S160	0.0	A0A2P5S160_GOSBA; Uncharacterized protein
STRING	Gorai.004G221300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3436	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-94	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]