PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2052

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 432aa MW: 48714.3 Da PI: 4.9602

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2052	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.6	2.4e-83	136	420	80	374
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 al++f ++sP++kf+ +t N+a+lea+ ++rvHiiD+di+qGlQW aL+++La+R+egpp + iTg+gs s + l etg++L+++A+++g+pf+ Gh_D08G2052 136 ALRAFDDASPFIKFACFTSNRAMLEAFRWHDRVHIIDLDIMQGLQWSALFHTLATRTEGPPFVTITGLGS----SMKLLVETGNQLSNIARQFGIPFD 229 7789****************************************************************....9******************* PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 f++ +ak++ ++++e++++++gEa+a+++ h+l+d +++ ++ +Lk + +l P+v+++veq+++h ++sFl+rf+++l+yys++fds+ + l Gh_D08G2052 230 FHP-IAKKFGEIDIETIQLQRGEAVAIHWLQ--HSLYDATGPNQN----TLKHIEQLAPTVLTLVEQDLSH-HGSFLDRFVNSLHYYSSIFDSFGSYL 319 .7***********************9..99999999999....********************.899******************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 ++e+ +r+ +E+ ll ei+nv+a g +r+ + + ++Wr+ l + F+ +pls++++++ +l+l+++ + gy++ ++g+l lgWk+ L+++S Gh_D08G2052 320 SAEDPNRHRIEHCLLYSEIKNVLAIGGPARTRDDNFGHNWRSELARnLKFQLMPLSSNTMAETELMLNMFWpGYGYSLVGDDGTLRLGWKETCLFTAS 417 *******************************999997649******************99********************** PP GRAS 372 aWr 374 aW+ Gh_D08G2052 418 AWT 420 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.586	49	399	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-81	136	420	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MTNRGFEVVH ATLDMIQPHQ EPIWELPSFG LPSTSSDMER NELSEWVEQV TEPVINELRT 60 EKSMVWPVGD KVLSLMMLLL DCAVAISVDD LSEAHTMLLE ITQMASPHAV SCGERGYNSW 120 LGLCSPLIDY ETVRGALRAF DDASPFIKFA CFTSNRAMLE AFRWHDRVHI IDLDIMQGLQ 180 WSALFHTLAT RTEGPPFVTI TGLGSSMKLL VETGNQLSNI ARQFGIPFDF HPIAKKFGEI 240 DIETIQLQRG EAVAIHWLQH SLYDATGPNQ NTLKHIEQLA PTVLTLVEQD LSHHGSFLDR 300 FVNSLHYYSS IFDSFGSYLS AEDPNRHRIE HCLLYSEIKN VLAIGGPART RDDNFGHNWR 360 SELARNLKFQ LMPLSSNTMA ETELMLNMFW PGYGYSLVGD DGTLRLGWKE TCLFTASAWT 420 ITTLRDGSGW SG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MTNRGFEVVH ATLDMIQPHQ EPIWELPSFG LPSTSSDMER NELSEWVEQV TEPVINELRT  60
EKSMVWPVGD KVLSLMMLLL DCAVAISVDD LSEAHTMLLE ITQMASPHAV SCGERGYNSW  120
LGLCSPLIDY ETVRGALRAF DDASPFIKFA CFTSNRAMLE AFRWHDRVHI IDLDIMQGLQ  180
WSALFHTLAT RTEGPPFVTI TGLGSSMKLL VETGNQLSNI ARQFGIPFDF HPIAKKFGEI  240
DIETIQLQRG EAVAIHWLQH SLYDATGPNQ NTLKHIEQLA PTVLTLVEQD LSHHGSFLDR  300
FVNSLHYYSS IFDSFGSYLS AEDPNRHRIE HCLLYSEIKN VLAIGGPART RDDNFGHNWR  360
SELARNLKFQ LMPLSSNTMA ETELMLNMFW PGYGYSLVGD DGTLRLGWKE TCLFTASAWT  420
ITTLRDGSGW SG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-112	82	420	26	379	Protein SCARECROW
5b3h_A	1e-112	82	420	25	378	Protein SCARECROW
5b3h_D	1e-112	82	420	25	378	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269\|PubMed:11333309}.
Uniprot	TISSUE SPECIFICITY: Expressed in the initial daughter cell before its asymmetric division and remains expressed in the endodermal cell layer after the division. {ECO:0000269\|PubMed:17446396}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division. {ECO:0000250}.
UniProt	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269\|PubMed:17446396}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477803.1	0.0	PREDICTED: protein SCARECROW 1-like
Swissprot	Q2RB59	1e-112	SCR1_ORYSJ; Protein SCARECROW 1
Swissprot	Q9AVK4	1e-111	SCR_PEA; Protein SCARECROW
TrEMBL	A0A0D2N275	0.0	A0A0D2N275_GOSRA; Uncharacterized protein
STRING	Gorai.004G221600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36755	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-110	GRAS family protein