PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2092
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 415aa    MW: 47485.5 Da    PI: 4.4328
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2092genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.98.1e-3621282128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   +GfrFhPtdeel+ eyL+ k+ +++  + +vi+e+ di+++ePw+Lp +  ++++++ wyf  + + ky+++k  +r+t +gyWk tgk ++++++ 
  Gh_D08G2092   2 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICEFEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEGYWKITGKARKIVNSe 97 
                  68************.9******9999666.89****************6347788999************************************9986 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +g ++g kktL fykg+ ++  k  Wvmhey+l
  Gh_D08G2092  98 TGMEIGNKKTLLFYKGQCND--KICWVMHEYEL 128
                  7888**********988877..9********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.6261150IPR003441NAC domain
SuperFamilySSF1019411.7E-353150IPR003441NAC domain
PfamPF023652.6E-193128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVKGFRFHPT DEELIEYLQI KTFNRDSLVQ VIAEIPDICE FEPWELPGRS VLQTGDRLWY  60
FMYPPKYKYR NSKLVSRTTL EGYWKITGKA RKIVNSETGM EIGNKKTLLF YKGQCNDKIC  120
WVMHEYELKA MLDSTNSHQK TFKLCKLKKK TNISSKEAGQ LDQYSLSDLE NHVANNALLE  180
DILDPNGSSD PEASNNHKDV HNRCRTVDTY GDERSNQHNI VDEDEGPNIS TNFVNHVAED  240
AIPEVPSHIF KVYQNGLEDN NWVQDLYSTI EQDDESCNLI ITSFDETITN ESSNQHNIVV  300
AEKGIETPII SYDETVTNER SNQHNIVVVE EGTEMSVISY DETVANERSN QHNIVDVHEG  360
FEMPSNLKYL VEEDTISAEL LYNNGSYSRS LFGELLAEPE ATNNSNCHVF GLVDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25115617171NO APICAL MERISTEM PROTEIN
1ut4_B2e-25115617171NO APICAL MERISTEM PROTEIN
1ut7_A2e-25115617171NO APICAL MERISTEM PROTEIN
1ut7_B2e-25115617171NO APICAL MERISTEM PROTEIN
4dul_A2e-25115617171NAC domain-containing protein 19
4dul_B2e-25115617171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754813.10.0PREDICTED: putative NAC domain-containing protein 94 isoform X1
TrEMBLA0A1U8PWR90.0A0A1U8PWR9_GOSHI; putative NAC domain-containing protein 94 isoform X1
STRINGGorai.004G227000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2437734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.29e-34TCV-interacting protein