PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2111
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9934.71 Da    PI: 9.4742
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2111genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.5e-161159350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                 i ++  r+ t+ kR + ++KK +ELS+LCd++++ i++s+ + +l  ++
  Gh_D08G2111 11 ITDDLARKATYKKRTKSLMKKLSELSTLCDIDACSIMYSPyESELEVWP 59
                 889999*********************************9334666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.591149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-22185IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.21E-25285No hitNo description
PRINTSPR004044.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MTRKKVKLAY ITDDLARKAT YKKRTKSLMK KLSELSTLCD IDACSIMYSP YESELEVWPS  60
PMGVQQVLSK LETIPEMEKS KNMLNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRTKSLMKKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478002.15e-53PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-28AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2S4H81e-51A0A0D2S4H8_GOSRA; Uncharacterized protein
STRINGGorai.004G229700.12e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-30AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]