PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2113
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27684 Da    PI: 6.7762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2113genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i ++s r+ t+ kR +g++KK +ELS+LCd++++ i++s+  
  Gh_D08G2113 11 IIDDSARKATYKKRAKGLMKKLSELSTLCDIDACSIMYSPYE 52
                 668899*********************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.306149IPR002100Transcription factor, MADS-box
CDDcd002666.63E-29285No hitNo description
SuperFamilySSF554553.4E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTRKKVKLAY IIDDSARKAT YKKRAKGLMK KLSELSTLCD IDACSIMYSP YESQLEVWPS  60
PMGVQQVLSK LETIPEMEKS KNMLNQESFL SQKTTKASEQ LKKHCKENWE KEMTQVMFNT  120
ICGKGVIHGL NFEALSEINL LLDKKMSDID KRIDALARTP LNPQWVSSSS SSSLVAAPPM  180
MMVAPEAMLR TGTEDIVQED VNEMDPIQRQ QWIMELMSNN NPQTHVGGNG MMFQFGDNIN  240
PNNGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRAKGLMKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755513.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8PYS80.0A0A1U8PYS8_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.004G229700.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-46AGAMOUS-like 80