PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2150

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 268aa MW: 30647.7 Da PI: 8.9494

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2150	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.6e-32	56	109	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Gh_D08G2150 56 PRLRWTPELHLSFVRAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 109 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.7	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-30	52	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-15	54	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-22	56	111	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MLMMKKNPLN LYDEDEEGDD GTKARDGASS SNSIVEECEK KASPNGVRHY VRSKMPRLRW 60 TPELHLSFVR AVERLGGQER ATPKLVLQLM NIKGLSIAHV KSHLQMYRSK KINDQGKGDY 120 LPQNLWHQST LHDHQRVISD ISWSAFCGNR TPEPYLTNFI NSRRKACSNA RNEILYNMNN 180 NFIFSQQPVN EMVDDCESNG AQIQPMLMHM HPCFANKWLG RGAERQGMSK RKPLDEDLDL 240 SLSLSTKLRR KTSNEEEATN SNLSLSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	57	111	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721555.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A1U8M423	0.0	A0A1U8M423_GOSHI; putative Myb family transcription factor At1g14600
STRING	Gorai.004G233300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-43	G2-like family protein