PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 475aa    MW: 53352.5 Da    PI: 4.4371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2153genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.63.9e-511184752374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL +c +a+ s+++elaq+++ rl+e asp+g++++Rla+y+t  L ++ +           ++e+    s++  aa++++++++P+ +f+h+taN
  Gh_D08G2153 118 LHLLKACGDAMGSKQMELAQEIIRRLNEKASPTGKSIERLAFYLTLSLDKQANY---------LMQEA----SKNYDAAFNALYQIFPYGRFAHFTAN 202
                  699***********************************************9998.........22222....3445567889**************** PP

         GRAS 100 qaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  +aIle++    +v Hi+Dfdi++G+QWpaL+++L    +g  +lR+T+++ +e++     +++ eet+++L k A+++g+++e + +   ++e l ++
  Gh_D08G2153 203 SAILESIPAYATVlHIVDFDIGKGIQWPALIETLGR--QGLRTLRLTTIKWEEEDgscnATTSFEETKKQLCKHAKTVGLRMEVEEM---DIEGL-MS 294
                  *******9996666********************98..6999********999989999999*********************9986...44444.33 PP

         GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpresee 281
                    +vk  +E la n+++ l ++   ++ + ++ +e+L + k l     s  ++++ +   ++   +++sF   f   l y+ al++s+e+   +  e+
  Gh_D08G2153 295 --KVKMdNEWLAFNCMVGLPHME--KQRSVKHVEEFLTTAKALlrsdtSKGIITLGDGIgIKKwtDDTSFDSFFEAQLVYFQALLESMEQF--QFLEA 386
                  ..344359**************6..444444589****999865444355688888864333344778888888889***********999..556** PP

         GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  ri +E  ++ ++++++v +++ +  e +    +    l++ G++p ++s +++ +a+ l+r+ + s   + e ++++++vlg ++ pLv vS+W+
  Gh_D08G2153 387 RIAMECLFVVPHLCSLVNAQQWK--ETCS---T-GCSLTKLGLEPRRMSWENYLEAEELVRQAEgSCSVKTEgQNNNEMVLGYMGAPLVRVSSWT 475
                  *******************9998..3333...3.46799*************************444445556779******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.74991453IPR005202Transcription factor GRAS
PfamPF035141.4E-48118475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDALVNSFKF STSSVSIEDF SDISSSTPYG DEAYSSHFLS THLPGILQWV NEGDTPNDQF  60
SLDGVENYCS EQMFMEDVSC QNLSPTSGEV SMDVIPLVQA YLVLPDESME IDNQTSILHL  120
LKACGDAMGS KQMELAQEII RRLNEKASPT GKSIERLAFY LTLSLDKQAN YLMQEASKNY  180
DAAFNALYQI FPYGRFAHFT ANSAILESIP AYATVLHIVD FDIGKGIQWP ALIETLGRQG  240
LRTLRLTTIK WEEEDGSCNA TTSFEETKKQ LCKHAKTVGL RMEVEEMDIE GLMSKVKMDN  300
EWLAFNCMVG LPHMEKQRSV KHVEEFLTTA KALLRSDTSK GIITLGDGIG IKKWTDDTSF  360
DSFFEAQLVY FQALLESMEQ FQFLEARIAM ECLFVVPHLC SLVNAQQWKE TCSTGCSLTK  420
LGLEPRRMSW ENYLEAEELV RQAEGSCSVK TEGQNNNEMV LGYMGAPLVR VSSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-151173794270GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721548.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U8M7A50.0A0A1U8M7A5_GOSHI; nodulation-signaling pathway 2 protein-like
STRINGGorai.004G233600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1927257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-21GRAS family protein