![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D08G2153 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 475aa MW: 53352.5 Da PI: 4.4371 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 165.6 | 3.9e-51 | 118 | 475 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
+lL +c +a+ s+++elaq+++ rl+e asp+g++++Rla+y+t L ++ + ++e+ s++ aa++++++++P+ +f+h+taN
Gh_D08G2153 118 LHLLKACGDAMGSKQMELAQEIIRRLNEKASPTGKSIERLAFYLTLSLDKQANY---------LMQEA----SKNYDAAFNALYQIFPYGRFAHFTAN 202
699***********************************************9998.........22222....3445567889**************** PP
GRAS 100 qaIleavegeerv.HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
+aIle++ +v Hi+Dfdi++G+QWpaL+++L +g +lR+T+++ +e++ +++ eet+++L k A+++g+++e + + ++e l ++
Gh_D08G2153 203 SAILESIPAYATVlHIVDFDIGKGIQWPALIETLGR--QGLRTLRLTTIKWEEEDgscnATTSFEETKKQLCKHAKTVGLRMEVEEM---DIEGL-MS 294
*******9996666********************98..6999********999989999999*********************9986...44444.33 PP
GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpresee 281
+vk +E la n+++ l ++ ++ + ++ +e+L + k l s ++++ + ++ +++sF f l y+ al++s+e+ + e+
Gh_D08G2153 295 --KVKMdNEWLAFNCMVGLPHME--KQRSVKHVEEFLTTAKALlrsdtSKGIITLGDGIgIKKwtDDTSFDSFFEAQLVYFQALLESMEQF--QFLEA 386
..344359**************6..444444589****999865444355688888864333344778888888889***********999..556** PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
ri +E ++ ++++++v +++ + e + + l++ G++p ++s +++ +a+ l+r+ + s + e ++++++vlg ++ pLv vS+W+
Gh_D08G2153 387 RIAMECLFVVPHLCSLVNAQQWK--ETCS---T-GCSLTKLGLEPRRMSWENYLEAEELVRQAEgSCSVKTEgQNNNEMVLGYMGAPLVRVSSWT 475
*******************9998..3333...3.46799*************************444445556779******************6 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 23.749 | 91 | 453 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.4E-48 | 118 | 475 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 475 aa Download sequence Send to blast |
MDALVNSFKF STSSVSIEDF SDISSSTPYG DEAYSSHFLS THLPGILQWV NEGDTPNDQF 60 SLDGVENYCS EQMFMEDVSC QNLSPTSGEV SMDVIPLVQA YLVLPDESME IDNQTSILHL 120 LKACGDAMGS KQMELAQEII RRLNEKASPT GKSIERLAFY LTLSLDKQAN YLMQEASKNY 180 DAAFNALYQI FPYGRFAHFT ANSAILESIP AYATVLHIVD FDIGKGIQWP ALIETLGRQG 240 LRTLRLTTIK WEEEDGSCNA TTSFEETKKQ LCKHAKTVGL RMEVEEMDIE GLMSKVKMDN 300 EWLAFNCMVG LPHMEKQRSV KHVEEFLTTA KALLRSDTSK GIITLGDGIG IKKWTDDTSF 360 DSFFEAQLVY FQALLESMEQ FQFLEARIAM ECLFVVPHLC SLVNAQQWKE TCSTGCSLTK 420 LGLEPRRMSW ENYLEAEELV RQAEGSCSVK TEGQNNNEMV LGYMGAPLVR VSSWT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 1e-15 | 117 | 379 | 4 | 270 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016721548.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
| TrEMBL | A0A1U8M7A5 | 0.0 | A0A1U8M7A5_GOSHI; nodulation-signaling pathway 2 protein-like | ||||
| STRING | Gorai.004G233600.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM19272 | 5 | 7 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G08250.1 | 1e-21 | GRAS family protein | ||||




