PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2260

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 372aa MW: 41766.1 Da PI: 8.1918

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2260	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.1e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Gh_D08G2260 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-15	144	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MYHHHQHQGK NINSSSRMVV HNERHLFLQG GHGDSGLMLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NLHGQTNNGS TKIGAVAMAG 120 KRMSEANGSP MNSLSIGPQA NKGIQIGEAL QMQIEVQRRL HEQLELRIEA QGKYLQSVLE 180 KAQETLHRQN LGTVGLEAAK LQLSELVSKV SNQCLNSAFP DLKDLRGLCC QQTQPNPPND 240 CSMDSCLTSC EGSQRDQEIH NNGMCLRTYN THKDPLMHHR TETKSSENKT MGNDDDDERR 300 MFFADRNCSD LSMSVGLRGG FSQARNEEHS FLDVGNKRVD SVNRLPYFAT KLDLNVDEKH 360 CKQFDLNGLN WS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MYHHHQHQGK NINSSSRMVV HNERHLFLQG GHGDSGLMLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NLHGQTNNGS TKIGAVAMAG  120
KRMSEANGSP MNSLSIGPQA NKGIQIGEAL QMQIEVQRRL HEQLELRIEA QGKYLQSVLE  180
KAQETLHRQN LGTVGLEAAK LQLSELVSKV SNQCLNSAFP DLKDLRGLCC QQTQPNPPND  240
CSMDSCLTSC EGSQRDQEIH NNGMCLRTYN THKDPLMHHR TETKSSENKT MGNDDDDERR  300
MFFADRNCSD LSMSVGLRGG FSQARNEEHS FLDVGNKRVD SVNRLPYFAT KLDLNVDEKH  360
CKQFDLNGLN WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476640.1	0.0	PREDICTED: uncharacterized protein LOC105792562 isoform X2
Swissprot	Q9SQQ9	1e-140	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2P5QUQ4	0.0	A0A2P5QUQ4_GOSBA; Uncharacterized protein
STRING	Gorai.004G244800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-145	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]