PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2434

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 389aa MW: 43877.7 Da PI: 7.5165

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2434	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.5e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yL+kkv+ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + Gh_D08G2434 8 VPPGFRFHPTDEELLHYYLTKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGSsPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103 69**************************.99**********963433332456*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Gh_D08G2434 104 SYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-60	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	8	159	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGSSNGGVPP GFRFHPTDEE LLHYYLTKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG 60 SSPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQGNPTEDG WVVCRVFKKK NLFKVSNTIN GGSSLNSSDQ 180 HHHLNMNHTN TTSSSSQTQP PPPLSFMHRS NDQYNLNTTT TTTLELNKAE LALHYPPHIP 240 TPTHQYSLFH PQTLLPTHKS MTAYEYAPPP PVSLPSESSH PIMIKQLMSS NPRDCDSGSE 300 SVRYQCETGL EGVAAGGGGG SGRDDENEGM NEWGMLDRLV TSHMGIGQDS SSKGVRFEDS 360 NNNGTNATSV HPINQLSLRG EMDFWGYGK

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGSSNGGVPP GFRFHPTDEE LLHYYLTKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG  60
SSPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNPTEDG WVVCRVFKKK NLFKVSNTIN GGSSLNSSDQ  180
HHHLNMNHTN TTSSSSQTQP PPPLSFMHRS NDQYNLNTTT TTTLELNKAE LALHYPPHIP  240
TPTHQYSLFH PQTLLPTHKS MTAYEYAPPP PVSLPSESSH PIMIKQLMSS NPRDCDSGSE  300
SVRYQCETGL EGVAAGGGGG SGRDDENEGM NEWGMLDRLV TSHMGIGQDS SSKGVRFEDS  360
NNNGTNATSV HPINQLSLRG EMDFWGYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	8	161	17	167	NAC domain-containing protein 19
4dul_B	2e-52	8	161	17	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269\|PubMed:20197506}.
Uniprot	TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269\|PubMed:20197506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616143	0.0	JX616143.1 Gossypium hirsutum clone NBRI_GE60576 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714996.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-149	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1U8LK59	0.0	A0A1U8LK59_GOSHI; protein BEARSKIN2-like
STRING	Gorai.004G267300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-117	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]