PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2446

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 323aa MW: 37198.6 Da PI: 4.7413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2446	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL++k++g+++el evi+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd++v s + Gh_D08G2446 6 LPPGFRFHPTDEELVAYYLHNKITGRPIEL-EVIPEVDLYKFEPWDLPdKsYLPSKDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKDRTVQS-Q 101 79**************************.99**********95335666888*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Gh_D08G2446 102 KRAVGIKKTLVYYRGRAPHGIRTNWVMHEYRL 133 999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-64	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	6	150	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLHNKITG RPIELEVIPE VDLYKFEPWD LPDKSYLPSK 60 DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRTVQS QKRAVGIKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLNSTLKD CYALCRVFKK NIQILKPKEE EAVGNNNNVD KEKQLHGEET 180 SGNEIPKGRQ VEIEDENLIT SSSDLTQGTS YETGMAMADD NQPPFTSDEA NSSANNISSS 240 LAMDFSSNLI QAEGYTNVEY QVPYPPLELE DFPQINLSET KAEMMDEYMV YDKYKDYMNG 300 SLEEIFSLCS SQDISMPLYM HQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-58	1	151	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-58	1	151	15	169	NAC domain-containing protein 19
3swm_B	4e-58	1	151	15	169	NAC domain-containing protein 19
3swm_C	4e-58	1	151	15	169	NAC domain-containing protein 19
3swm_D	4e-58	1	151	15	169	NAC domain-containing protein 19
3swp_A	4e-58	1	151	15	169	NAC domain-containing protein 19
3swp_B	4e-58	1	151	15	169	NAC domain-containing protein 19
3swp_C	4e-58	1	151	15	169	NAC domain-containing protein 19
3swp_D	4e-58	1	151	15	169	NAC domain-containing protein 19
4dul_A	4e-58	1	151	12	166	NAC domain-containing protein 19
4dul_B	4e-58	1	151	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714972.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	3e-84	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1U8LK66	0.0	A0A1U8LK66_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.004G268400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-105	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]