PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2550

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 245aa MW: 27247.1 Da PI: 8.8688

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2550	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.3	1.1e-17	19	49	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+r Pv gRKRC HKG+Ri Gh_D08G2550 19 ICGVAMDDGSLCRRRPVSGRKRCDLHKGRRI 49 8*****************************7 PP
2	HRT-like	26.2	1.4e-08	220	244	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 iCG+ +++Gs C+r Pvkg+ RC++H Gh_D08G2550 220 ICGAPTRNGSSCRR-PVKGNGRCWQH 244 8*********86.9******** PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MKSQPYKEDY PEIEHCSPIC GVAMDDGSLC RRRPVSGRKR CDLHKGRRIY SSNSEITRYQ 60 TTPYAVFNSY SDEASDFYEN RTGMAISIYN RNNCSTPICG VPTCNGIPCK RTGNVNGRCW 120 QHLKYSGSRS SSNDFTPRNS NNGEASDFYE NRTGMAISIC NRNNCSTPIC GVPTCNGTPC 180 KRTGNVNGRC WQHLNYSGSR SSSNDFTPRY SNNDSTGTSI CGAPTRNGSS CRRPVKGNGR 240 CWQHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477849.1	1e-112	PREDICTED: uncharacterized protein LOC105793489
TrEMBL	A0A1U8M0W6	3e-83	A0A1U8M0W6_GOSHI; protein EFFECTOR OF TRANSCRIPTION 2-like
STRING	EOY30505	7e-52	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-19	effector of transcription2