PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2660
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 123aa    MW: 13528.7 Da    PI: 6.6236
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2660genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06446541
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  C+++e   ++  C  ++  lC +C ++ H        H++ p
  Gh_D08G2660  4 QCNLCEAAVAKVLCCADEAALCLECDEKVHAAnklvseHQRLP 46
                 7*****************************6678888888776 PP
2zf-B_box25.23.4e-085487235
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                 +++kC+ ++e    +fC +++ llC++C +++H 
  Gh_D08G2660 54 QMPKCDICQEISGFFFCLQDRALLCRKCDVAIHT 87
                 789*******889*******************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000214.48E-5347No hitNo description
SMARTSM003369.6E-8447IPR000315B-box-type zinc finger
SMARTSM003369.1E-1253100IPR000315B-box-type zinc finger
PfamPF006439.0E-65487IPR000315B-box-type zinc finger
CDDcd000214.91E-55687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRIQCNLCEA AVAKVLCCAD EAALCLECDE KVHAANKLVS EHQRLPLFSS SSFQMPKCDI  60
CQEISGFFFC LQDRALLCRK CDVAIHTVNS VVSCHQRFLL TGVEVDVGTK TDHTIGASCF  120
NAK
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5902585e-95JX590258.1 Gossypium hirsutum clone NBRI_GE25138 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715007.13e-85PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-54BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1U8LK978e-84A0A1U8LK97_GOSHI; B-box zinc finger protein 22-like
TrEMBLA0A2P5R3G58e-84A0A2P5R3G5_GOSBA; Uncharacterized protein
STRINGGorai.004G271600.11e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-43light-regulated zinc finger protein 1