PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2683
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 183aa    MW: 21777.2 Da    PI: 9.0644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2683genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.54.7e-31201471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  lp G+rF P+d+el+++yL +k++g +l+  +v+k++d y+++P ++     k+  +++e y+F+k+++  ++ +r +r t++gyWk+ gk +e+++ 
  Gh_D08G2683  20 LPIGYRFVPRDHELISFYLFNKIKGFQLPS-DVVKNIDFYYLDPFHFSpCefKHGRKNNEAYYFTKTKEIRSKMDRIERHTRNGYWKSCGKAEEIKH- 115
                  699**************************9.99**************64423444566799************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +glk+ +vf+  r p+    +Wvmhe++l
  Gh_D08G2683 116 GDRIIGLKRLFVFH-WRIPELGFGNWVMHEFSL 147
                  999***********.7888989*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3318175IPR003441NAC domain
PROSITE profilePS5100532.84820177IPR003441NAC domain
PfamPF023652.2E-1821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAAALVSDDS FLDEYEDKAL PIGYRFVPRD HELISFYLFN KIKGFQLPSD VVKNIDFYYL  60
DPFHFSPCEF KHGRKNNEAY YFTKTKEIRS KMDRIERHTR NGYWKSCGKA EEIKHGDRII  120
GLKRLFVFHW RIPELGFGNW VMHEFSLHPT LLIPHPLLDE KIKAKIQRCV ICRIVNREGY  180
YGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-182018115172Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478033.11e-135PREDICTED: NAC domain-containing protein 45-like
RefseqXP_016690930.11e-135PREDICTED: NAC domain-containing protein 45-like
TrEMBLA0A0D2N3U61e-134A0A0D2N3U6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JKW21e-134A0A1U8JKW2_GOSHI; NAC domain-containing protein 45-like
STRINGGorai.004G258200.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-22NAC domain containing protein 57