PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0132

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 451aa MW: 50434.2 Da PI: 6.9873

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0132	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	135	194	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +k l+cprC+s++tkfCyynny++sqPr+fCk+C+ryWt+GG++rnvPvG+grr++k+ss Gh_D09G0132 135 NKVLPCPRCNSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKNSS 194 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	131	191	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MTEPNDLTIK LFGKTIPLPV KSPKAVVAAT ISNIYATCDD ACNHNNNYKK DIVTDKTIDA 60 EHELGDRKED RSKQDGTAPL VASEEFMNLE VTYGPSDKRD ALSIENESTG LETCKTDEDR 120 NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN 180 VPVGAGRRRS KNSSSHYRHV IVSEPLRNAC DDETMCNTTQ NRFHKPEELN IHVSYRGGKN 240 GVEHLNGSSI AKAGSQDQMM QNCRSFPPHM PCFPGFFLPY SWNSARWSSP LPPPTFCPPS 300 YSMPFYPTAP YWGCALPTSW NVPWLPQPSS EMQTAPSSGS NSPSLGKHSR DEDMGKPCSI 360 GEDEPVNENN AERCLWISKT LRIDDPGEAS RSSIWVTSGS KNDKVDSIGD ERLFKGFQSK 420 GDKRNQVLET SPILQANPAA FSRSINFQES S

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MTEPNDLTIK LFGKTIPLPV KSPKAVVAAT ISNIYATCDD ACNHNNNYKK DIVTDKTIDA  60
EHELGDRKED RSKQDGTAPL VASEEFMNLE VTYGPSDKRD ALSIENESTG LETCKTDEDR  120
NETSNPEEKT LKKLNKVLPC PRCNSMDTKF CYYNNYNVSQ PRHFCKNCQR YWTAGGTMRN  180
VPVGAGRRRS KNSSSHYRHV IVSEPLRNAC DDETMCNTTQ NRFHKPEELN IHVSYRGGKN  240
GVEHLNGSSI AKAGSQDQMM QNCRSFPPHM PCFPGFFLPY SWNSARWSSP LPPPTFCPPS  300
YSMPFYPTAP YWGCALPTSW NVPWLPQPSS EMQTAPSSGS NSPSLGKHSR DEDMGKPCSI  360
GEDEPVNENN AERCLWISKT LRIDDPGEAS RSSIWVTSGS KNDKVDSIGD ERLFKGFQSK  420
GDKRNQVLET SPILQANPAA FSRSINFQES S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567176	1e-103	AJ567176.1 Gossypium hirsutum microsatellite DNA mGhCIR230, clone CIR230.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670357.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1U8HWH4	0.0	A0A1U8HWH4_GOSHI; cyclic dof factor 1-like
STRING	Gorai.006G015500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24746	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-83	cycling DOF factor 2