PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0146
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 183aa    MW: 20013.3 Da    PI: 7.7639
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0146genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.15.8e-3559115358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Gh_D09G0146  59 VVTYKECLKNHAATLGGHALDGCGEFMPSPSATpSDPTSLKCAACGCHRNFHRRESD 115
                  589*****************************99********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1760116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-2960114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3161113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13762113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEIAPTSTPP LSTTTPKSPD PETETPVRIQ PAKPKSFTNG VLKRHQPHHH YLHHAPPIVV  60
TYKECLKNHA ATLGGHALDG CGEFMPSPSA TPSDPTSLKC AACGCHRNFH RRESDDPPPT  120
TTATATIEYQ PHHRHHPPPP ASQAPHRSPN SASPPPISSS YYPSAPHMLL ALSEHFWEER  180
SSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.29490.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483620.11e-121PREDICTED: zinc-finger homeodomain protein 9
RefseqXP_016672954.11e-121PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG01e-48ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0D2Q1Y01e-120A0A0D2Q1Y0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IB021e-120A0A1U8IB02_GOSHI; zinc-finger homeodomain protein 9-like
STRINGGorai.006G017200.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-37homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]