PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0298
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 446aa    MW: 50425.2 Da    PI: 5.44
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0298genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.6e-311142561128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                  lp+G++F+P+d+el+ ++L++k+   +      ++++   + e+ +i++++P++Lp  ++++ ++++fF+++ ++y+tg+rk+r+         ++ +
  Gh_D09G0298 114 LPVGVKFDPSDSELL-DHLAAKCGVGDskehlfIDEFILtLCECqGICYTHPENLP-GARKDGSSIHFFHRTINAYSTGQRKRRKiqnqdntnEEHVR 209
                  799************.899999887774455543333333555558**********.555678899******************86777775544899 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                  W++tgk+k+v++ +g ++g kk++v+yk   +  k+ek++Wvmh+y+l
  Gh_D09G0298 210 WHKTGKTKPVTE-NGVHKGWKKIMVLYKStkKGCKPEKSNWVMHQYHL 256
                  ***********9.999***********6422556788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3599275IPR003441NAC domain
PROSITE profilePS5100529.247114275IPR003441NAC domain
PfamPF023652.0E-13115256IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKLEIRSCQV LKHSSDKEPN FVSEPNGSGP VFRELKSFAY TLFSIHHSSS SSSPFFTLLM  60
ARSWLVDSRA IAKKVKNASW SSSVQITDCG ANRECPNCHY RIDNSDVFPQ WPGLPVGVKF  120
DPSDSELLDH LAAKCGVGDS KEHLFIDEFI LTLCECQGIC YTHPENLPGA RKDGSSIHFF  180
HRTINAYSTG QRKRRKIQNQ DNTNEEHVRW HKTGKTKPVT ENGVHKGWKK IMVLYKSTKK  240
GCKPEKSNWV MHQYHLGDTE DEHDGEYVVS KIFYQQQKQT EKNDDSPMTE EPDNLMIRTS  300
PRTPKTIAPD PPRPWKSMIL DDIEENMHQE AKFAVERSDV HTDAVQCEDN SHYPAWLAGE  360
SQAVENPDFN GFDEFLLCNE LLDSSSLPTT NDPKADGAAI ETKGNNDASC GISELENLEF  420
DTPPDVTLAD LQFGSQESIL SWLDRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471960.0KC847196.1 Gossypium hirsutum NAC domain protein NAC19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673290.10.0PREDICTED: NAC domain-containing protein 8-like, partial
TrEMBLA0A0D2RWI60.0A0A0D2RWI6_GOSRA; Uncharacterized protein
STRINGGorai.006G034600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-102NAC domain containing protein 44