PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0315
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 309aa    MW: 34678.7 Da    PI: 7.2593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0315genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-082644826
                 GGGGTS--TTTTT-SS-SS CS
      zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                 f++++G Ck+G+ CkF+H+
  Gh_D09G0315 26 FYLKSGNCKFGSCCKFNHP 44
                 8*****************9 PP
2zf-CCCH26.79.8e-096488226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k+ +C+++++tG CkyG+ C++ H+
  Gh_D09G0315 64 KQIECKYYRATGGCKYGNACRYRHS 88
                 7779******************997 PP
3zf-CCCH23.31.1e-07127149527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C++++  G CkyG  C+++H++
  Gh_D09G0315 127 ECKYYLSPGGCKYGKACRYSHSK 149
                  7********************95 PP
4zf-CCCH36.86.4e-12177199426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C++++r+G C yG++C+F+H+
  Gh_D09G0315 177 KECPYYMRNGSCAYGSSCRFNHP 199
                  68********************9 PP
5zf-CCCH23.87.9e-08281306227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C ++ ++G+CkyG+ C F+H++
  Gh_D09G0315 281 DRRICWNYEKSGICKYGSICYFHHPE 306
                  689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.4981846IPR000571Zinc finger, CCCH-type
SMARTSM003563.22345IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-42644IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-46289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7566290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66492IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-66488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-76892IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021122149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577122150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5127153IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6127149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5128150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802173201IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5175200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6176201IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9177199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5179198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.033280307IPR000571Zinc finger, CCCH-type
SMARTSM003560.18280306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6280307IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGSYEEHSPV LREPPNETQP ESLSGFYLKS GNCKFGSCCK FNHPVSRTIK DKENHLGLAT  60
DQKKQIECKY YRATGGCKYG NACRYRHSNE DYVLAPLEVN SLALPFQVDI NEKSEKDGLA  120
EQTGQIECKY YLSPGGCKYG KACRYSHSKE KSRYLEKSEL PPPELNFLGL PIRMLEKECP  180
YYMRNGSCAY GSSCRFNHPD PTAAEGSSTF RSDPSGSGDH SPGNYNGGFD ALPSAELTAP  240
SLSLNMMSNE HLKCLNQNSA YAHGMHANSE WSGHQYTAVQ DRRICWNYEK SGICKYGSIC  300
YFHHPENLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672718.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBLA0A1U8I8Z50.0A0A1U8I8Z5_GOSHI; zinc finger CCCH domain-containing protein 67-like isoform X1
STRINGGorai.006G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-38C3H family protein