PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0473
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 413aa    MW: 46420.4 Da    PI: 4.7672
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0473genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.2e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C ++ H+       Ht+v
  Gh_D09G0473 16 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 59
                 578*****************************668899999987 PP
2CCT68.51.8e-23357400144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+a
  Gh_D09G0473 357 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKGRFVKRA 400
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5091461IPR000315B-box-type zinc finger
PfamPF006431.8E-71659IPR000315B-box-type zinc finger
CDDcd000211.20E-91761No hitNo description
PROSITE profilePS5101716.152357399IPR010402CCT domain
PfamPF062036.6E-18357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MISDKRAANA MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR  60
LETASSRFNA SVINNSATDQ DAPPAWHQGF TRKARTPRQN RSILGQQKSE GKVWDLNPLV  120
PEVGCEDGSA DETEDQLLCR VPVFDPFSAE LRDMVNENGN LVVDGFEDEG TCQLDDGLHG  180
FLPSDLDLAQ FAADVESLLG DGLDENNIHT KGTELMDCKQ EDESNAFQER KIKDEEEEEE  240
EGIITACCFD SDFDVTRSSL NWSLDYESPT IGDQEEEEKV VPVAETMDGE NKAEKKRNML  300
LRLDYESVIT AWATQGSPWT SGTRPEFNPD DFMGSNPKEG IGGICSQGKR NITDGEREAR  360
VSRYREKRRT RLFSKKIRYQ VRKLNAEKRP RIKGRFVKRA SFVGGDCFSY YIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367383RRTRLFSKKIRYQVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.64460.0leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834527e-60JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672482.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1U8I2M40.0A0A1U8I2M4_GOSHI; zinc finger protein CONSTANS-LIKE 16-like
STRINGGorai.006G061600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-97B-box type zinc finger protein with CCT domain