PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0477
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 239aa    MW: 25596.3 Da    PI: 8.4932
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0477genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.22.3e-274107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +++l+ a p++ r+ +++sl+yeA+ r+ dP +G+vg++ +++++l++++++
  Gh_D09G0477   4 SCNGCRVLRKGCTESCTIRPCLqwipnAQSQANATLFLAKFYGRAGLINLIGAGPQNLRPGVFKSLLYEACGRIVDPAHGSVGLMCSGNWHLCEAAVD 101
                  6*********************9996656779****************************************************************99 PP

       DUF260  94 lallke 99 
                  ++l ++
  Gh_D09G0477 102 AVLNGS 107
                  988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5483109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPN AQSQANATLF LAKFYGRAGL INLIGAGPQN  60
LRPGVFKSLL YEACGRIVDP AHGSVGLMCS GNWHLCEAAV DAVLNGSPIK QVPSELSASK  120
CPQLKSSFDI RHVSKDKKSD DGLRKVKSQG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG  180
ECLSVETVEC SLAKGDELGN GSDLELELTL GLEPRTKKRG NNINGGGDAT CGGRVEGLC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672484.11e-175PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9CA303e-65LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A1U8I9N01e-173A0A1U8I9N0_GOSHI; LOB domain-containing protein 40-like
STRINGGorai.006G061200.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-67LOB domain-containing protein 42