PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0619

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 199aa MW: 21766.2 Da PI: 8.7741

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0619	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Gh_D09G0619 49 FECQFCHRGFANSQALGGHQNEH 71 89******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.86E-6	47	76	No hit	No description
PROSITE profile	PS50157	11.136	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNSADNYGDD EPGCGKPSSS TMKLFGFQVG ADEECPPSVR RNVSEYRRFE CQFCHRGFAN 60 SQALGGHQNE HKRERRAKQG SFFSLHHQQQ QQLKQRFLTT GPVISPHSAR TRRLAYGRGS 120 TSMAPRGGLS AAAPSLPMLT PRGPCPFHVG GGGQGQGQGP FQVQNHEVGV NLTANEVIEE 180 DNIDLHLRLA PFNDRANGP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673262.1	1e-146	PREDICTED: zinc finger protein KNUCKLES-like
TrEMBL	A0A1U8I4Y4	1e-145	A0A1U8I4Y4_GOSHI; zinc finger protein KNUCKLES-like
STRING	Gorai.006G078000.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20638	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	3e-11	C2H2 family protein