PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0703
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 189aa    MW: 22025.1 Da    PI: 8.1975
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0703genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34261242103
                   HHHHHHHHHCTG......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                   Fl k+y +le++      e+k+++sw+++gn f+v+ +++f++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++Fk+g k+
   Gh_D09G0703  26 FLLKTYALLEEAeeggggEYKKIVSWNDEGNGFIVWSPTDFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKHEKFKRGYKH 113
                   9*********77777888****************************************************9998.........************** PP

                   XXXXXXXXXXX CS
  HSF_DNA-bind  93 llekikrkkse 103
                   +l +i rkk+e
   Gh_D09G0703 114 MLVEITRKKTE 124
                   ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3518116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-4322121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-2723121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-2826121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-97082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-98395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MELELEDPNY QNNKSKSLVT KGTAPFLLKT YALLEEAEEG GGGEYKKIVS WNDEGNGFIV  60
WSPTDFSDLT LPRYFKHNNF SSFIRQLNTY GFKKTSSKRW EFKHEKFKRG YKHMLVEITR  120
KKTEATTAFL KSNCGDEDNM MMKNGNQQTL MEENENLRKE KMELETQIAQ FKALEIKLLD  180
CIAQHMGPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-16231211104Putative transcription factor
5d5x_B1e-16231211104Putative transcription factor
5d5x_E1e-16231211104Putative transcription factor
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486180.0KJ748618.1 Gossypium hirsutum HSF15 (HSF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484710.11e-139PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_016672180.11e-139PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A0D2NNW21e-138A0A0D2NNW2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I1S01e-138A0A1U8I1S0_GOSHI; heat stress transcription factor B-2a-like
STRINGGorai.006G087100.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-36heat shock transcription factor B2A