PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0712
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 257aa    MW: 28049.2 Da    PI: 9.0875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0712genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202676256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Gh_D09G0712 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 76
                 69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-142675IPR001471AP2/ERF domain
CDDcd000188.69E-192683No hitNo description
PROSITE profilePS5103223.8942683IPR001471AP2/ERF domain
SMARTSM003808.0E-382689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-322683IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-222684IPR016177DNA-binding domain
PRINTSPR003675.5E-112738IPR001471AP2/ERF domain
PRINTSPR003675.5E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPREKSTAA VKGNGNGGGG ISKEVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDAAA REFRGAKAKT NFPLPCENIN NGVNVINCDN HINNNGKINI NINNNQSSNQ  120
SSTVESSSLE PTTIMIDSSP LDLNLGRRSI TGYGSSTVRF PFHQVSPVTG FFHAAGVPTI  180
ASPKVFYFDA FVRSGGMVKG QQYQRMTFDH HDFHTAFNGS VQSDSDSSSV VDLNHDEIKP  240
RPLLNIDLNQ PALPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-232684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248420.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484724.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A0D2SU790.0A0A0D2SU79_GOSRA; Uncharacterized protein
STRINGGorai.006G088000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2501134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-27erf domain protein 9