PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0716

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 313aa MW: 36029.7 Da PI: 6.7806

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0716	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.4e-52	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+ +yL++k++ ++++l ++i++v+iyk++Pw+Lp k+ +e+ew+fFs+rd+ky++g+r+nrat gyWkatg+dk+++++ ++ Gh_D09G0716 11 LPPGFRFHPTDEELIIYYLNQKLSPSSNPLINIIADVNIYKFDPWELPGKALFGENEWFFFSPRDRKYPNGTRPNRATGCGYWKATGTDKPIITSvGS 108 79**************************999***********8777899*********************************999788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g+kktLvfykgr pkg++tdWvm eyrl Gh_D09G0716 109 QCLGMKKTLVFYKGRPPKGSRTDWVMTEYRL 139 88*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-61	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.955	11	166	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MYGMNSGSDI LPPGFRFHPT DEELIIYYLN QKLSPSSNPL INIIADVNIY KFDPWELPGK 60 ALFGENEWFF FSPRDRKYPN GTRPNRATGC GYWKATGTDK PIITSVGSQC LGMKKTLVFY 120 KGRPPKGSRT DWVMTEYRLL YDHFLPQKPK GSMRLDDWVL CRVHHKIKVP QQITSGRNYD 180 RSSSCSPPFQ RGCLQGQEMI LNNYTIQQGN EYHQFPSHNY HMTIPLENEQ LDNQMECDGT 240 ITIDFNVRDM LEYIDRRVFH GGDIALGQEL PLVSEKRLNA SVSMHDDDNA YVPQICSQAP 300 SSSSSFREVF LEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-64	11	172	20	174	NAC domain-containing protein 19
3swm_B	7e-64	11	172	20	174	NAC domain-containing protein 19
3swm_C	7e-64	11	172	20	174	NAC domain-containing protein 19
3swm_D	7e-64	11	172	20	174	NAC domain-containing protein 19
3swp_A	7e-64	11	172	20	174	NAC domain-containing protein 19
3swp_B	7e-64	11	172	20	174	NAC domain-containing protein 19
3swp_C	7e-64	11	172	20	174	NAC domain-containing protein 19
3swp_D	7e-64	11	172	20	174	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847242	0.0	KC847242.1 Gossypium hirsutum NAC domain protein NAC65 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313731.1	0.0	NAC transcription factor 56-like
Refseq	XP_012483232.1	0.0	PREDICTED: NAC transcription factor 25-like
Swissprot	K4BNG7	1e-70	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A1U8ICD5	0.0	A0A1U8ICD5_GOSHI; NAC transcription factor 56-like
STRING	Gorai.006G088400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25010	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-70	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]