PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0781

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 244aa MW: 26845.7 Da PI: 4.7718

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0781	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	62	109	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ykGVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a + + Gh_D09G0781 62 IYKGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109 69**998.******843...6*****************997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.9E-11	61	109	IPR001471	AP2/ERF domain
CDD	cd00018	3.24E-31	61	121	No hit	No description
SuperFamily	SSF54171	8.5E-21	62	120	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.1E-31	62	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.115	62	119	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-33	62	125	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	63	74	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	85	101	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAESNHCSSS EAESSITNNN SSSSSLRKPN NPSAVEVAAT SMIIDQGKKR PRPRDSSTKH 60 PIYKGVRMRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSATLNFPD 120 LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSPSSSSSS SLSESSEEPE ELSEIVELPN 180 IEGNLDSLFD SGNEFVLIDS VDVWVYDPSQ DFNGGFYDQT WDVTENFKLN SGSFETFSSE 240 NNLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-18	44	119	1	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393553	1e-132	GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673435.1	1e-177	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	2e-55	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1U8I5B8	1e-176	A0A1U8I5B8_GOSHI; ethylene-responsive transcription factor TINY-like
STRING	Gorai.006G097000.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	1e-52	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]