PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0836
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 281aa    MW: 32110.4 Da    PI: 5.7525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0836genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-1420981096
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +++++ + +p + + ++ +    + t tl++ +g+ W+v l   k++++++++kGW++F ++n + +g f++F ++g   f   vk+
  Gh_D09G0836 20 THSLHSMLIPATAV-ACPLT---PATATLRNCNGQCWQVDL--VKCDNKMYFRKGWRRFIDENSVVDGNFLIFNYVGGCVF--DVKI 98
                 45566789999988.88766...568***************..*********************************98888..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576135No hitNo description
Gene3DG3DSA:2.40.330.101.5E-169102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-189104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-141399No hitNo description
SMARTSM010193.9E-1013102IPR003340B3 DNA binding domain
PfamPF023627.9E-122095IPR003340B3 DNA binding domain
PROSITE profilePS5086311.37841102IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-10155241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-9155260IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.46159256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVKKMSNFEA KNFYKVYLTT HSLHSMLIPA TAVACPLTPA TATLRNCNGQ CWQVDLVKCD  60
NKMYFRKGWR RFIDENSVVD GNFLIFNYVG GCVFDVKIYE FDACEKSIPY VVSEESESES  120
EDDGSDSDDA MNDEGADSME VEDEEIHPED YVQHLNPYFV AKTTKSSQRM NELYIPTGIA  180
KDFGVSLEDG EKITFVDLYN RKSIGKVVKW KDQRTCIKGW RSVLNRNKVN LERDTCICEF  240
LLENGQQAEM GVQTKSIQVH VISRRKPSDL GIKASKKQKQ K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748539.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A1U8PE280.0A0A1U8PE28_GOSHI; B3 domain-containing protein At4g34400-like
STRINGGorai.006G102500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.17e-13B3 family protein