PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0943

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 228aa MW: 25840 Da PI: 6.5199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0943	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.5	8.4e-43	4	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + GfrF Pt+eelv++yL+++++g + +++ vi+ ++i y++ePwdLpk +k++ ++w++F++r++++a+g r++r+t+sgyWkatg+ v+s Gh_D09G0943 4 AIGFRFFPTEEELVSFYLRNQLQGMRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFTPRQEREARGGRASRTTASGYWKATGSPGFVYS 101 57*************************889873678**656765566888********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Gh_D09G0943 102 SDDRVIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135 ******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-45	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	44.821	3	162	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEVAIGFRFF PTEEELVSFY LRNQLQGMRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG 60 DVEQWFYFTP RQEREARGGR ASRTTASGYW KATGSPGFVY SSDDRVIGMK KTMVFYKGKA 120 PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHEFSLCRVY VASSSSRAFD RRPLEAHNNA 180 ATTSGGASGT SHAGGDHYNP AEASEDEFWE LVNNLEEHAI GWGQINEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-30	1	167	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-30	1	167	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-30	1	167	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-30	1	167	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-30	1	167	18	173	NAC domain-containing protein 19
3swm_B	4e-30	1	167	18	173	NAC domain-containing protein 19
3swm_C	4e-30	1	167	18	173	NAC domain-containing protein 19
3swm_D	4e-30	1	167	18	173	NAC domain-containing protein 19
3swp_A	4e-30	1	167	18	173	NAC domain-containing protein 19
3swp_B	4e-30	1	167	18	173	NAC domain-containing protein 19
3swp_C	4e-30	1	167	18	173	NAC domain-containing protein 19
3swp_D	4e-30	1	167	18	173	NAC domain-containing protein 19
4dul_A	4e-30	1	167	15	170	NAC domain-containing protein 19
4dul_B	4e-30	1	167	15	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3801	0.0	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ130042	0.0	KJ130042.1 Gossypium barbadense NAC protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671853.1	1e-172	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-85	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U8I6L2	1e-171	A0A1U8I6L2_GOSHI; NAC domain-containing protein 90-like
STRING	Gorai.006G113000.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-85	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]