PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0944
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 212aa    MW: 24577.1 Da    PI: 6.4116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0944genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-091157346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                     +W+   d+l+ +a  ++ ++    +W++Ia+ ++ g+++ +++ ++ +
      Gh_D09G0944 11 AWSWHQDKLFERALVMFSNDessdRWEKIAAQVP-GKSAADVRRHYED 57
                     8*********************************.***********76 PP
2Myb_DNA-binding44.14.9e-14115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
      Gh_D09G0944 115 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 159
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.212762IPR017884SANT domain
SMARTSM007171.3E-5861IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-91067IPR009057Homeodomain-like
PfamPF002491.7E-71157IPR001005SANT/Myb domain
CDDcd001673.97E-51155No hitNo description
PROSITE profilePS5129419.214108164IPR017930Myb domain
SuperFamilySSF466894.04E-17110165IPR009057Homeodomain-like
SMARTSM007172.3E-10112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12112158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17112162IPR006447Myb domain, plants
PfamPF002491.2E-11115159IPR001005SANT/Myb domain
CDDcd001676.79E-9115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MIRTNDDASS AWSWHQDKLF ERALVMFSND ESSDRWEKIA AQVPGKSAAD VRRHYEDLEH  60
DVLEIESGRV ELPSYEGELE SASWVNESGR SQVWVGSKGK ERERERESER RKGVPWTEEE  120
HRLFLIGLQK YGKGDWRSIS RNAVVSRTPT QVASHAQKYF LRLNSVNEKN KKRSSIHDLK  180
MGDDNSMDPQ SKFFNEQGSS FVNNHGYEFP LL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.261410.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9638121e-109JX963812.1 Gossypium hirsutum clone NBRI_TRANS-1038 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671854.11e-155PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN66e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1U8I7Y31e-154A0A1U8I7Y3_GOSHI; transcription factor DIVARICATA-like
STRINGGorai.006G113100.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2056656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-54MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]