PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1008
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 193aa    MW: 21100 Da    PI: 5.7612
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1008genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45e-43391381100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la++k
  Gh_D09G1008  39 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPETQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQINELQAQLAKAK 136
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  ++
  Gh_D09G1008 137 AQ 138
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.91738139IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-4339136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MFKMEYSEST PTTTTATTSS NSPSSSSPPP PPPAVVISPC AACKILRRRC ADKCVLAPYF  60
PPTDPAKFTI AHRVFGASNI IKFLQELPET QRADAVSSMV YEASARIRDP VYGCAGAICQ  120
LQKQINELQA QLAKAKAQAE VANMQLQQAN LAAFLCMEMA ETTSAQPNSH QFVDNPSFME  180
DNNFGSFWEP LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-413816710127LOB family transfactor Ramosa2.1
5ly0_B6e-413816710127LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6169071e-137JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671812.11e-142PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR08e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1U8I0Q11e-140A0A1U8I0Q1_GOSHI; LOB domain-containing protein 1-like
STRINGGorai.006G120900.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-61LOB domain-containing protein 1