PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1297
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 390aa    MW: 42640.6 Da    PI: 4.9378
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1297genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.6e-121152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 ien+s r  ++ kRr+g+ KK  EL +LC++e  ++i+ ++ 
  Gh_D09G1297 11 IENSSARRASLRKRRQGLVKKVTELTTLCGVEGGIVIYTKNE 52
                 9************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.082151IPR002100Transcription factor, MADS-box
CDDcd002662.09E-21285No hitNo description
SuperFamilySSF554551.83E-18493IPR002100Transcription factor, MADS-box
PfamPF003194.8E-131152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTGKRVKLAW IENSSARRAS LRKRRQGLVK KVTELTTLCG VEGGIVIYTK NEEEPIVWPS  60
REEMEQLLRK FNEIPEVERM KKSMNLETYY KGMISKSQDQ LRRETRKTKE MEVGQLMLQI  120
EQGKKLDDFS VNELDDMKWY METMRTDMGK LKEFYEKFPP SSVGPTQGDV PLPPPPPQGS  180
APAVGQNIGI ADAGVGDKDT FEDFPWEDPL NANTNTNYIR GEASSSIRRE MGLTYHDPFA  240
AVTGDHLTLP GSSLGGAGSS SLHQPRPSHG GNSSIAPEPG LTGFSYGGNT SAAIEPRPPR  300
PPFGYDSSSS VGTAKPELPP FEPLSDDLLK GDSLGPFDND MGPGHFPLGP LESSSPASDF  360
GGNPLRFFGG ESSSHGVEGN RETGPFDDKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166630.0JX616663.1 Gossypium hirsutum clone NBRI_GE61484 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690502.10.0PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A1U8JJM80.0A0A1U8JJM8_GOSHI; agamous-like MADS-box protein AGL90
STRINGGorai.006G153400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.17e-24AGAMOUS-like 48