PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1332

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 402aa MW: 43771.6 Da PI: 8.4909

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1332	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.4	7.9e-26	146	189	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Gh_D09G1332 146 DPEPGRCRRTDGKKWRCSRDVVPGQKYCERHVHRGRNRSRKPVE 189 79***************************************997 PP
2	QLQ	51.3	3.4e-18	81	117	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLl +i+k Gh_D09G1332 81 SYFSLAQWQELELQALIYRYMLAGAAVPPELLHPIKK 117 79*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-10	81	117	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.134	82	117	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.9E-13	82	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.655	146	190	IPR014977	WRC domain
Pfam	PF08879	3.8E-22	147	189	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDLHLKQWRN QHESEQQPSA KIPKLLLDLD APHHHHHHSQ QQQQHASSEP SALPLFVSES 60 NSKISGSLSA PLPDSNSRMG SYFSLAQWQE LELQALIYRY MLAGAAVPPE LLHPIKKSLL 120 YSSSYFLHHY QPALLQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVPGQ KYCERHVHRG 180 RNRSRKPVEM PTSSSTAAAA NNSNVSVTAR FGGGGSGCGA VKARSPMTAS TLAAVANGPN 240 NFGLSRPSPP VDLLQLNHSS PESKTEPKGL FEAQNEVDDR SDGHILRHFF DDWPRTLQDP 300 DNNGTNASPI NSSTCLSISM PGNSSDVSLK LSTGNGDSRR EHHQQPPLNW AMGGWAASNQ 360 VASMGGPLAE ALLSSSTSNS SPTSVLHQLP KGSTSEISYI ST

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDLHLKQWRN QHESEQQPSA KIPKLLLDLD APHHHHHHSQ QQQQHASSEP SALPLFVSES  60
NSKISGSLSA PLPDSNSRMG SYFSLAQWQE LELQALIYRY MLAGAAVPPE LLHPIKKSLL  120
YSSSYFLHHY QPALLQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVPGQ KYCERHVHRG  180
RNRSRKPVEM PTSSSTAAAA NNSNVSVTAR FGGGGSGCGA VKARSPMTAS TLAAVANGPN  240
NFGLSRPSPP VDLLQLNHSS PESKTEPKGL FEAQNEVDDR SDGHILRHFF DDWPRTLQDP  300
DNNGTNASPI NSSTCLSISM PGNSSDVSLK LSTGNGDSRR EHHQQPPLNW AMGGWAASNQ  360
VASMGGPLAE ALLSSSTSNS SPTSVLHQLP KGSTSEISYI ST

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477984	4e-52	AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691444.1	0.0	PREDICTED: growth-regulating factor 3-like isoform X2
Swissprot	Q8L8A7	2e-82	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A1U8JT44	0.0	A0A1U8JT44_GOSHI; growth-regulating factor 3-like isoform X2
STRING	EOY08148	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	6e-65	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]