PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1394

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 201aa MW: 21846.6 Da PI: 7.9255

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1394	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.3	8.1e-36	38	167	7	89
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnsssg............. 88 +++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++a +c +s ++s+++++ Gh_D09G1394 38 TSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTTPAaheISC--ASGLTTTSSPTEScqlhpvgigsgvv 133 689********************************************************77777433233..22222222222223344455555555 PP TCP 89 .................................k 89 + Gh_D09G1394 134 agmytvttpppscrldlcqpmgfqystvgrngyQ 167 5555555555555555555555555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-30	38	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	39	93	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAFHKFSATS NRTNSNLNSS LAGESTPKTQ LRKPIPLTSK DRHTKVNGRG RRVRMPALCA 60 ARIFQLTREL GHRSDGETIE WLLRQAEPSI IAATGSGTTP AAHEISCASG LTTTSSPTES 120 CQLHPVGIGS GVVAGMYTVT TPPPSCRLDL CQPMGFQYST VGRNGYQHMP FTALLLQPTA 180 AAEEEEQQVG KEEEEEKRHQ E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485940.1	1e-145	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	2e-45	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0D2QBD5	1e-144	A0A0D2QBD5_GOSRA; Uncharacterized protein
STRING	Gorai.006G165300.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	9e-47	TCP family protein