PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1456
Common NameWRKY38
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 300aa    MW: 33963.8 Da    PI: 6.0591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1456genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.3e-29111167258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK +k++++prsYY+C  ++C++kk+vers+++p++++itYeg H h
  Gh_D09G1456 111 DDGYKWRKYGQKWIKNTPNPRSYYKCRNPRCSAKKQVERSKDEPDTLIITYEGFHLH 167
                  8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-27108167IPR003657WRKY domain
SuperFamilySSF1182905.62E-25108167IPR003657WRKY domain
PROSITE profilePS5081125.511109170IPR003657WRKY domain
SMARTSM007742.8E-32110169IPR003657WRKY domain
PfamPF031063.0E-24111167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEKEQKDDRF GCEDELLREL LDDESPLFVL QQGTVQAKSK TSGEDSTKRL ICAGPKIEDI  60
ENALSVKTWN GTQYQVQQQN RINSIQQERG LTKIENKYTL KIKNYGNCMA DDGYKWRKYG  120
QKWIKNTPNP RSYYKCRNPR CSAKKQVERS KDEPDTLIIT YEGFHLHFAY PYLPLDNHHQ  180
PSPDDTISPT KKAKQGISEA ESQVPETIAN YTNIEPLPSS IEGCPPEMSL EAGFSQQGLL  240
EDVVPWVIRN PSHNNNISSI SSSSSSSNYS RSPPASPYSL STSPFYDPCL DILSINSSIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-181091671674Probable WRKY transcription factor 4
2lex_A6e-181091671674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698380.0KF669838.1 Gossypium hirsutum WRKY transcription factor 38 (WRKY38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483104.10.0PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
RefseqXP_016671207.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1U8HYW40.0A0A1U8HYW4_GOSHI; probable WRKY transcription factor 49
STRINGGorai.006G171700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-44WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]