PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1495
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 167aa    MW: 18745.7 Da    PI: 9.8549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1495genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004887109123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg+ Fs    L  H r+H
  Gh_D09G1495  87 HECSICGQEFSMGQALGGHRRRH 109
                  78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.3E-113863IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-838109No hitNo description
SMARTSM003551.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5363966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139122.7E-1186111IPR007087Zinc finger, C2H2
SMARTSM003550.5587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRERESVEI QGFDIAKSLM LLSQGLQTKP KEHSVSEVFE CKTCHRCFPS FQALGGHRAS  60
HKRPKLMGDK PNETTQFLSL STKPKTHECS ICGQEFSMGQ ALGGHRRRHR AAMNESFSPF  120
PLVPTVPVLK RSNSSRRVVC LDLNLTPLEN DLQVLFGNKA PKVDLCI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673384.11e-119PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-49ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2P5PVP81e-119A0A2P5PVP8_GOSBA; Uncharacterized protein
STRINGGorai.006G176000.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-43C2H2 family protein